宁夏地区2019-2020年诺如病毒所致感染性腹泻流行特征和病原学分析Epidemiological and Etiological Analysis of Norovirus Diarrhea in Ningxia,China from 2019 to 2020
魏开心;石安琪;曹慜;袁芳;赵瑜;赵建华;马江涛;
摘要(Abstract):
了解宁夏地区感染性腹泻患者中诺如病毒的流行特征和基因进化规律,为该地区诺如病毒所致腹泻防控策略的制定提供科学依据。在宁夏自治区5个市的15家哨点医院开展腹泻症状监测,收集患者粪便标本和相关信息并采用Real-time RT-PCR方法进行诺如病毒初筛检测,阳性标本扩增其聚合酶(RdRp)-衣壳蛋白(Capsid)区基因,扩增产物测序后使用Sequencher 4.1.4软件进行序列拼接和编辑,并用MEGA-X、DNASTAR生物软件进行序列比对、系统进化分析以及同源性分析,应用SPSS 25.0软件进行相关统计学分析。结果显示2019-2020年共收集感染性腹泻患者粪便标本2 358份,诺如病毒检出率为13.44%(317/2 358)。主要为GⅡ基因群(285/317),其中,0~2岁年龄组阳性率最高,为18.43%(188/1 020);60~70岁年龄组阳性率最低,为3.36%(4/119),各年龄组阳性率差异有统计学意义(P<0.05)。不同地区、年份、季节间阳性率比较,差异有统计学意义。GⅠ基因群(32/2 358)以GⅠ.P13/GⅠ.3(75.0%)为流行优势株,GⅡ基因群以GⅡ.Pe/GⅡ.4Sydney_2012(37.18%)为流行优势株。宁夏地区诺如病毒所致腹泻好发于婴幼儿,主要为GⅡ基因群,且流行的优势基因型别有显著改变,需要加强监测。
关键词(KeyWords): 感染性腹泻;诺如病毒;流行特征;基因分型
基金项目(Foundation): 国家自然科学基金项目(项目号:81960607),题目:宁夏流行诺如病毒分布特征及分子进化规律研究~~
作者(Authors): 魏开心;石安琪;曹慜;袁芳;赵瑜;赵建华;马江涛;
DOI: 10.13242/j.cnki.bingduxuebao.004262
参考文献(References):
- [1] Ahmed S M, Hall A J, Robinson A E, Verhoef L,Premkumar P, Parashar U D, Koopmans M, Lopman B A. Global prevalence of norovirus in cases of gastroenteritis:a systematic review and meta-analysis[J/OL]. Lancet Infect Dis, 2014, 14(8):725-730.DOI:10.1016/s1473-3099(14)70767-4.
- [2]Global burden of 369 diseases and injuries in 204countries and territories, 1990-2019:a systematic analysis for the Global Burden of Disease Study 2019[J/OL]. Lancet, 2020, 396(10258):1204-1222. DOI:10.1016/s0140-6736(20)30925-9.
- [3] Xue L, Cai W, Gao J, Zhang L, Dong R, Li Y, Wu H, Chen M, Zhang J, Wang J, Wu Q. The resurgence of the norovirus GII. 4 variant associated with sporadic gastroenteritis in the post-GII.17 period in South China,2015 to 2017[J/OL]. BMC Infect Dis, 2019, 19(1):696.DOI:10.1186/s12879-019-4331-6.
- [4] Nasheri N, Petronella N, Ronholm J, Bidawid S,Corneau N. Characterization of the genomic diversity of norovirus in linked patients using a metagenomic deep sequencing approach[J/OL]. Front Microbiol, 2017,8:73.DOI:10.3389/fmicb.2017.00073.
- [5] Nguyen G T, Phan K, Teng I, Pu J, Watanabe T. A systematic review and meta-analysis of the prevalence of norovirus in cases of gastroenteritis in developing countries[J/OL]. Medicine(Baltimore), 2017, 96(40):e8139.DOI:10.1097/md.0000000000008139.
- [6] Chhabra P, de Graaf M, Parra G I, Chan M C, Green K, Martella V, Wang Q, White P A, Katayama K,Vennema H, Koopmans M P G, VinjéJ. Updated classification of norovirus genogroups and genotypes[J/OL]. J Gen Virol, 2019, 100(10):1393-1406. DOI:10.1099/jgv.0.001318.
- [7] Cannon J L, Barclay L, Collins N R, Wikswo M E,Castro C J, Maga?a L C, Gregoricus N, Marine R L,Chhabra P, VinjéJ. Genetic and epidemiologic trends of norovirus outbreaks in the united states from 2013 to2016 demonstrated emergence of novel GII. 4recombinant viruses[J/OL]. J Clin Microbiol, 2017, 55(7):2208-2221.DOI:10.1128/jcm.00455-17.
- [8]李静,张婷,邹文菁,徐军强,蔡昆. 2017―2019年湖北省病毒性腹泻哨点监测病例中诺如病毒流行及基因特征[J/OL].中华疾病控制杂志,2021, 25(11):1332-1335+1359.DOI:10.16462/j.cnki.zhjbkz.2021.11.017.
- [9]余建兴,赖圣杰,王鑫,廖巧红,冯录召,冉陆,许文波,邱燕子,张子科,黎孟枫,吴建国,刘玮,袁正宏,陈瑜,赵世文,王新华,赵卓,余宏杰,景怀琦,李中杰,杨维中.中国27省(市、自治区)2009-2013年门诊腹泻病例诺如病毒流行特征分析[J/OL].中华流行病学杂志,2015, 36(03):199-204.DOI:10.3760/cma.j.issn.0254-6450.2015.03.003.
- [10]雷玥,庄志超,田宏,李晓燕. 2019年天津市急性胃肠炎人群诺如病毒基因分型分析[J/OL].疾病监测,2020, 35(10):913-919. DOI:10.3784/j. issn. 1003-9961.2020.10.011.
- [11]刘丹,陈诹,阎思瑾,叶楚楚,朱渭萍. 2015—2019年上海浦东新区诺如病毒感染性腹泻流行特征分析[J/OL].公共卫生与预防医学,2021, 32(03):54-57.DOI:10.3969/j.issn.1006-2483.2021.03.013.
- [12]洪颖,史永林,张魁,江良梁,王蓉,王利,陈谨,陈健,陈道利.安徽省马鞍山市哨点医院食源性疾病患者诺如病毒感染的分子流行病学特征分析[J/OL].中华预防医学杂志,2019(6):581-585.DOI:10.3760/cma.j.issn.0253-9624.2019.06.008.
- [13]Wang P, Goggins W B, Chan E Y Y. A time-series study of the association of rainfall, relative humidity and ambient temperature with hospitalizations for rotavirus and norovirus infection among children in Hong Kong[J/OL]. Sci Total Environ, 2018, 643:414-422. DOI:10.1016/j.scitotenv.2018.06.189.
- [14]贾立平,赵林清,周林,刘立颖,董慧瑾,朱汝南,钱渊. 2020年北京地区儿童中急性胃肠炎相关诺如病毒的分子流行病学特征[J/OL].中华儿科杂志,2021, 59(08):645-650. DOI:10.3760/cma. j. cn112140-20210525-00451.
- [15]Lun J, Hewitt J, Yan G, Enosi Tuipulotu D,Rawlinson W, White P. Recombinant GII. P16/GII. 4Sydney 2012 was the dominant norovirus identified in Australia and New Zealand in 2017[J/OL]. Viruses,2018, 10(10).DOI:10.3390/v10100548.
- [16]Ahmed S, Lopman B, Levy K. A systematic review and meta-analysis of the global seasonality of norovirus[J/OL]. PLoS One, 2013, 8(10):e75922. DOI:10.1371/journal.pone.0075922.
- [17]乔雪飞,刘玲,吴健灏,李萌,俞佳莉,李欣,吕锡宏,吴佳瑾. 2017—2019年上海市松江区诺如病毒感染性腹泻疫情的病毒基因型特征分析[J/OL].中华预防医学杂志,2021, 55(11):1316-1320. DOI:10.3760/cma.j.cn112150-20210907-00878.
- [18]Robilotti E, Deresinski S, Pinsky B A. Norovirus[J/OL]. Clin Microbiol Rev, 2015, 28(1):134-164.DOI:10.1128/cmr.00075-14.
- [19]Farsi M, Roodbari F, Nejati B, Arashkia A, Jalilvand S, Nateghian A, Rahbarimanesh A, Marashi S M,Shoja Z. Prevalence and genetic diversity of norovirus genogroup II in children less than 5 years of age with acute gastroenteritis in Tehran, Iran[J/OL]. Med Microbiol Immunol, 2018, 207(3-4):201-210. DOI:10.1007/s00430-018-0541-6.
- [20]Cates J E, VinjéJ, Parashar U, Hall A J. Recent advances in human norovirus research and implications for candidate vaccines[J/OL]. Expert Rev Vaccines,2020, 19(6):539-548. DOI:10.1080/14760584.2020.1777860.
- [21]闫玉晓,周永康,张会芳,王芳,靳淼,章青,孔翔羽,李慧莹,李静欣,刘娜,李金松,李宇宁,段招军. 2015—2018年兰州市5岁以下住院腹泻儿童诺如病毒分子流行病学分析[J/OL].国际病毒学杂志,2020(01):53-56.DOI:10.3760/cma.j.issn.1673-4092.2020.01.013.
- [22]李静,张婷,邹文菁,蔡昆,徐军强. 2018-2019年湖北省5岁及以下腹泻儿童诺如病毒感染特征和病原学分析[J/OL].疾病监测,2021, 36(04):369-375.DOI:10.3784/jbjc.202101050006.
- [23]Chuchaona W, Chansaenroj J, Wanlapakorn N,Vongpunsawad S, Poovorawan Y. Recombinant GII.PeGII.4 Norovirus, Thailand, 2017-2018[J/OL]. Emerg Infect Dis, 2019, 25(8):1612-1614. DOI:10.3201/eid2508.190365.
- [24]党文,马江涛,陈慧,袁芳,马学旻,詹军. 2016—2017年宁夏急性胃肠炎患者中诺如病毒感染状况及重组类型分析[J/OL].中华预防医学杂志,2019, 53(08):811-816. DOI:10.3760/cma. j. issn. 0253-9624.2019.08.003.
- [25]Han J, Ji L, Shen Y, Wu X, Xu D, Chen L.Emergence and predominance of norovirus GII. 17Huzhouin, China, 2014-2015[J/OL]. Virol J, 2015,12:139.DOI:10.1186/s12985-015-0370-9.
- [26]Motomura K, Boonchan M, Noda M, Tanaka T,Takeda N. Norovirus epidemics caused by new GII. 2chimera viruses in 2012-2014 in Japan[J/OL]. Infect Genet Evol, 2016, 42:49-52. DOI:10.1016/j.meegid.2016.04.026.
- [27]Ao Y, Wang J, Ling H, He Y, Dong X, Wang X,Peng J, Zhang H, Jin M, Duan Z. Norovirus GII.P16/GII. 2Gastroenteritis-Associated, China, 2016[J/OL].Emerg Infect Dis, 2017, 23(7):1172-1175. DOI:10.3201/eid2307.170034.
- [28]Jin M, Wu S, Kong X, Xie H, Fu J, He Y, Feng W,Liu N, Li J, Rainey J J, Hall A J, VinjéJ, Duan Z.Norovirus Outbreak Surveillance, China, 2016-2018[J/OL]. Emerg Infect Dis, 2020, 26(3):437-445.DOI:10.3201/eid2603.191183.
- [29]Niendorf S, Jacobsen S, Faber M, Eis-Hübinger A M,Hofmann J, Zimmermann O, H?hne M, Bock C T.Steep rise in norovirus cases and emergence of a new recombinant strain GII. P16-GII. 2, Germany, winter2016[J/OL]. Euro Surveill, 2017, 22(4). DOI:10.2807/1560-7917.Es.2017.22.4.30447.
- [30]Matsushima Y, Shimizu T, Ishikawa M, Komane A,Okabe N, Ryo A, Kimura H, Katayama K, Shimizu H.Complete genome sequence of a recombinant GII. P16-GII. 4 norovirus detected in Kawasaki city, Japan, in2016[J/OL]. Genome Announc, 2016, 4(5). DOI:10.1128/genomeA.01099-16.