14株H10N3亚型禽流感病毒的遗传变异研究Genetic Variation Analysis of Fourteen H10N3 Avian Influenza Virus Isolates
袁悦,田甜,杨静茹,张春鸽,李娟,杨婧,周柳,田文霞,史卫峰,杨永春,毕玉海
摘要(Abstract):
该研究分析了监测发现的H10N3亚型禽流感病毒的遗传特征,并与人源H10亚型禽流感病毒进行比较,分析禽源与人源H10病毒的遗传相关性。2020年6月至2022年6月在浙江某地采集外表健康家禽的喉头与泄殖腔拭子,接种鸡胚后取尿囊液进行血凝效价和流感病毒荧光定量PCR检测,对流感病毒核酸阳性的样品进行全基因测序和遗传变异分析。在采集的1 462份样本中,共分离到14株H10N3禽流感病毒。HA和NA基因分析显示,分离毒株与人源H10N3毒株位于同一进化分支,相似性分别在95.1%~98.5%和95.2%~99.4%;分离毒株的HA基因与人源H10N8毒株的相似性为91.8%~93.2%;在分离鉴定的禽源H10N3毒株中,A/Dk/ZJ/4-23HZBX0004-O/2021毒株的HA和NA基因与人源H10N3毒株相似性最高。内部基因分析显示,人源H10N3和H10N8毒株的内部基因均源自H9N2禽流感病毒,而分离毒株的6个内部基因片段来自H9N2或其他亚型低致病性禽流感病毒。基因位点分析显示,13株H10N3病毒HA基因均为禽源受体(α-2,3-SA)结合特征(226Q和228G);发现1株H10N3(A/Dk/ZJ/4-23HZBX0004-O/2021)与人源H10N3毒株的226和228位具有相同的氨基酸残基Q和S,其中228S可能会促进病毒与人源受体(α-2,6-SA)的结合。同时,分离毒株与人源毒株的多个基因存在哺乳动物适应性突变,如HA蛋白S138A、Q220R和S212N突变,可能影响病毒的受体结合能力;PA蛋白K356R、S409N突变,PB1蛋白I368V、S375N突变,可能会增强病毒在哺乳动物细胞中的聚合酶活性或对小鼠等哺乳动物的致病力;此外,M2携带S31N突变,提示分离毒株对金刚烷胺类药物具有耐药性。本研究分离鉴定的H10N3禽流感病毒与人源H10N3毒株的HA和NA基因具有一定遗传相关性,但病毒内部基因片段来源有明显差异。提示:H10N3病毒在家禽中经过基因重配和变异后,突破种间屏障进而造成人类的感染。虽然本研究鉴定的禽源H10N3病毒和人源毒株具有一定遗传差异,但禽源毒株携带人源受体结合能力及哺乳动物适应性增强的基因位点突变,进一步说明了H10N3禽流感病毒的公共卫生风险,需要加强关注。
关键词(KeyWords): 禽流感病毒;H10N3;遗传变异;进化
基金项目(Foundation): 国家重点研发计划(项目号:2022YFC2601602),题目:重要跨境野生动物病原传播机制及发生风险;; 中美疾控中心合作项目(项目号:5 U01IP001106-04-00),题目:China-U.S.Collaborative Program on Emerging and Re-emerging Infectious Diseases;; 广州国家实验室自立项目(项目号:SRPG22-001),题目:重要呼吸道病原遗传变异特征和跨种传播机制研究;; 中国科学院国际合作局—海教中心(项目号:151C53KYSB20210023),题目:禽流感病毒的遗传多样性与流行风险预警;中国科学院青年创新促进会(项目号:Y2021034);; 泰山学者青年专家计划项目(项目号:tsqn202211217)~~
作者(Author): 袁悦,田甜,杨静茹,张春鸽,李娟,杨婧,周柳,田文霞,史卫峰,杨永春,毕玉海
DOI: 10.13242/j.cnki.bingduxuebao.004369
参考文献(References):
- [1] El-Shesheny R, Franks J, Marathe B M, Hasan M K,Feeroz M M, Krauss S, Vogel P, Mckenzie P, Webby R J, Webster R G. Genetic characterization and pathogenic potential of H10 avian influenza viruses isolated from live poultry markets in Bangladesh[J/OL]. Sci Rep, 2018, 8(1):10693. DOI:10.1038/s41598-018-29079-1.
- [2] Kim H R, Lee Y J, Oem J K, Bae Y C, Kang M S,Kang H M, Choi J G, Park C K, Kwon Y K.Characterization of H10 subtype avian influenza viruses isolated from wild birds in South Korea[J/OL]. Vet Microbiol, 2012, 161(1-2):222-228. DOI:10.1016/j.vetmic.2012.07.014.
- [3] Vijaykrishna D, Deng Y M, Su Y C, Fourment M,Iannello P, Arzey G G, Hansbro P M, Arzey K E,Kirkland P D, Warner S, O′riley K, Barr I G, Smith G J, Hurt A C. The recent establishment of North American H10 lineage influenza viruses in Australian wild waterfowl and the evolution of Australian avian influenza viruses[J/OL]. J Virol, 2013, 87(18):10182-10189. DOI:10.1128/JVI.03437-12.
- [4] Dwars R M, Matthijs M G, Daemen A J, Van Eck J H, Vervelde L, Landman W J. Progression of lesions in the respiratory tract of broilers after single infection with Escherichia coli compared to superinfection with Ecoli after infection with infectious bronchitis virus[J/OL].Vet Immunol Immunopathol, 2009, 127(1-2):65-76.DOI:10.1016/j.vetimm.2008.09.019.
- [5] Senne D A. Avian influenza in the Western Hemisphere including the Pacific Islands and Australia[J/OL].Avian Dis, 2003, 47(3 Suppl):798-805. DOI:10.1637/0005-2086-47.s3.798.
- [6] Serena Beato M, Terregino C, Cattoli G, Capua I.Isolation and characterization of an H10N7 avian influenza virus from poultry carcasses smuggled from China into Italy[J/OL]. Avian Pathol, 2006, 35(5):400-403. DOI:10.1080/03079450600920992.
- [7] Vachieri S G, Xiong X, Collins P J, Walker P A,Martin S R, Haire L F, Zhang Y, Mccauley J W,Gamblin S J, Skehel J J. Receptor binding by H10influenza viruses[J/OL]. Nature, 2014, 511(7510):475-477. DOI:10.1038/nature13443.
- [8]罗思思,谢芝勋,刘加波,庞耀珊,邓显文,谢志勤,谢丽基,范晴. H10亚型禽流感病毒RT-LAMP可视化检测方法的建立[J/OL].中国兽医学报,2016, 36(01):75-78. DOI:10.16303/j. cnki. 1005-4545.2016.01.13.
- [9] Kishida N, Sakoda Y, Shiromoto M, Bai G R, Isoda N, Takada A, Laver G, Kida H. H2N5 influenza virus isolates from terns in Australia:genetic reassortants between those of the Eurasian and American lineages[J/OL]. Virus Genes, 2008, 37(1):16-21. DOI:10.1007/s11262-008-0235-z.
- [10]Bi Y, Mei K, Shi W, Liu D, Yu X, Gao Z, Zhao L,Gao G F, Chen J, Chen Q. Two novel reassortants of avian influenza A(H5N6)virus in China[J/OL]. J Gen Virol, 2015, 96(Pt 5):975-981. DOI:10.1099/vir.0.000056.
- [11]Bi Y, Chen J, Zhang Z, Li M, Cai T, Sharshov K,Susloparov I, Shestopalov A, Wong G, He Y, Xing Z,Sun J, Liu D, Liu Y, Liu L, Liu W, Lei F, Shi W,Gao G F. Highly pathogenic avian influenza H5N1 Clade2.3.2.1c virus in migratory birds, 2014-2015[J/OL].Virol Sin, 2016, 31(4):300-305. DOI:10.1007/s12250-016-3750-4.
- [12]Ma C, Lam T T, Chai Y, Wang J, Fan X, Hong W,Zhang Y, Li L, Liu Y, Smith D K, Webby R J, Peiris J S, Zhu H, Guan Y. Emergence and evolution of H10subtype influenza viruses in poultry in China[J/OL]. J Virol, 2015, 89(7):3534-3541. DOI:10.1128/JVI.03167-14.
- [13]Vijaykrishna D, Deng YM, Su YC, Fourment M,Iannello P, Arzey GG, Hansbro PM, Arzey KE,Kirkland PD, Warner S, O′Riley K, Barr IG, Smith GJ, Hurt AC. The recent establishment of North American H10 lineage influenza viruses in Australian wild waterfowl and the evolution of Australian avian influenza viruses[J/OL]. J Virol, 2013, 87(18):10182-10189.DOI:10.1128/JVI.03437-12.
- [14]Wu H, Lu R, Wu X, Peng X, Xu L, Cheng L, Lu X,Jin C, Xie T, Yao H, Wu N. Novel reassortant H10N7avian influenza viruses isolated from chickens in Eastern China[J/OL]. J Clin Virol, 2015, 65:58-61. DOI:10.1016/j.jcv.2015.02.007.
- [15]Wu H, Lu R, Wu X, Peng X, Xu L, Cheng L, Lu X,Jin C, Xie T, Yao H, Wu N. Isolation and characterization of a novel H10N2 avian influenza virus from a domestic duck in Eastern China[J/OL]. Infect Genet Evol, 2015, 29:1-5. DOI:10.1016/j.meegid.2014.10.029.
- [16]Wu H, Yang F, Liu F, Peng X, Chen B, Cheng L, Lu X, Yao H, Wu N. Molecular characterization of H10subtype avian influenza viruses isolated from poultry in Eastern China[J/OL]. Arch Virol, 2019, 164(1):159-179. DOI:10.1007/s00705-018-4019-z.
- [17]Jing J, Wang L, Wang G, Dai Z, Ren W, Yi C, Wei J, Xu C. A human infection case with avian-origin H10N3 influenza virus[J/OL]. Quant Imaging Med Surg, 2021, 11(10):4508-4510. DOI:10.21037/qims-21-592..
- [18]唐玲. 2016-2019年上海野鸟H10-H12亚型禽流感病毒的监测与遗传进化分析[D].上海:华东师范大学,2021.
- [19]Bi Y, Li J, Li S, Fu G, Jin T, Zhang C, Yang Y, Ma Z, Tian W, Li J, Xiao S, Li L, Yin R, Zhang Y,Wang L, Qin Y, Yao Z, Meng F, Hu D, Li D, Wong G, Liu F, Lv N, Wang L, Fu L, Yang Y, Peng Y,Ma J, Sharshov K, Shestopalov A, Gulyaeva M, Gao G F, Chen J, Shi Y, Liu W J, Chu D, Huang Y, Liu Y, Liu L, Liu W, Chen Q, Shi W. Dominant subtype switch in avian influenza viruses during 2016-2019 in China[J/OL]. Nat Commun, 2020, 11(1):5909.DOI:10.1038/s41467-020-19671-3.
- [20]Bi Y, Chen Q, Wang Q, Chen J, Jin T, Wong G,Quan C, Liu J, Wu J, Yin R, Zhao L, Li M, Ding Z,Zou R, Xu W, Li H, Wang H, Tian K, Fu G, Huang Y, Shestopalov A, Li S, Xu B, Yu H, Luo T, Lu L,Xu X, Luo Y, Liu Y, Shi W, Liu D, Gao G F.Genesis, Evolution and prevalence of H5N6 avian influenza viruses in China[J/OL]. Cell Host Microbe,2016, 20(6):810-821. DOI:10.1016/j.chom.2016.10.022.
- [21]曾晓旭,张恒,焦铭,陈涛,李希妍,黄维娟,杨静,王大燕.中国南方三省H10亚型禽流感病毒基因特征分析[J/OL].山东大学学报(医学版),2021, 59(05):52-59.
- [22]Liu K, Ding P, Pei Y, Gao R, Han W, Zheng H, Ji Z,Cai M, Gu J, Li X, Gu M, Hu J, Liu X, Hu S, Zhang P, Wang X, Wang X, Liu X. Emergence of a novel reassortant avian influenza virus(H10N3)in Eastern China with high pathogenicity and respiratory droplet transmissibility to mammals[J/OL]. Sci China Life Sci, 2022, 65(5):1024-1035. DOI:10.1007/s11427-020-1981-5.
- [23]Wang M, Zhang W, Qi J, Wang F, Zhou J, Bi Y, Wu Y, Sun H, Liu J, Huang C, Li X, Yan J, Shu Y, Shi Y, Gao G F. Structural basis for preferential avian receptor binding by the human-infecting H10N8 avian influenza virus[J/OL]. Nat Commun, 2015, 6:5600.DOI:10.1038/ncomms6600.
- [24]Zhang H, De Vries R P, Tzarum N, Zhu X, Yu W,Mcbride R, Paulson J C, Wilson IA. A human-infecting H10N8 influenza virus retains a strong preference for avian-type receptors[J/OL]. Cell Host Microbe, 2015,17(3):377-384. DOI:10.1016/j.chom.2015.02.006.
- [25]Herfst S, Zhang J, Richard M, Mcbride R, Lexmond P, Bestebroer T M, Spronken M I J, De Meulder D,Van Den Brand J M, Rosu M E, Martin S R, Gamblin S J, Xiong X, Peng W, Bodewes R, Van Der Vries E,Osterhaus A, Paulson J C, Skehel J J, Fouchier R A M. Hemagglutinin traits determine transmission of avian A/H10N7 influenza virus between mammals[J/OL].Cell Host Microbe, 2020, 28(4):602-613 e7. DOI:10.1016/j.chom.2020.08.011.
- [26]Vachieri SG, Xiong X, Collins PJ, Walker PA, Martin SR, Haire LF, Zhang Y, McCauley JW, Gamblin SJ,Skehel JJ. Receptor binding by H10 influenza viruses[J/OL]. Nature, 2014, 511(7510):475-7. DOI:10.1038/nature13443.
- [27]Huang W, Cheng Y, Li X, Tan M, Wei H, Zhao X,Xiao N, Dong J, Wang D. Neuraminidase inhibitor susceptibility profile of human influenza viruses during the 2016-2017 influenza season in Mainland China[J/OL]. J Infect Chemother,2018, 24(9):729-733. DOI:10.1016/j.jiac.2018.05.003.
- [28]许冠龙,张谞霄,孙洪磊,孙怡朋,蒲娟,刘金华. H10N7亚型禽流感病毒鼠适应毒的致病机制研究[C]//第四届全国禽病分子生物技术青年工作者会议论文集,中国畜牧兽医学会禽病学分会:中国畜牧兽医学会,2015:45-46.
- [29]丁小满,俞慕华.流感病毒蛋白糖基化及其功能研究进展[J/OL].中国人兽共患病学报,2014, 30(12):1267-1271.
- [30]Abed Y, Goyette N, Boivin G. Generation and characterization of recombinant influenza A(H1N1)viruses harboring amantadine resistance mutations[J/OL]. Antimicrob Agents Chemother, 2005, 49(2):556-559. DOI:10.1128/AAC.49.2.556-559.2005.
- [31]Fan S, Deng G, Song J, Tian G, Suo Y, Jiang Y,Guan Y, Bu Z, Kawaoka Y, Chen H. Two amino acid residues in the matrix protein M1 contribute to the virulence difference of H5N1 avian influenza viruses in mice[J/OL]. Virology, 2009, 384(1):28-32. DOI:10.1016/j.virol.2008.11.044.
- [32]Guo Y, Ding P, Li Y, Zhang Y, Zheng Y, Yu M,Suzuki Y, Zhang H, Ping J. Genetic and biological properties of H10N3 avian influenza viruses:A potential pandemic candidate?[J/OL]. Transbound Emerg Dis,2022, 69(5):e3171-e3182. DOI:10.1111/tbed.14458.
- [33]Durairaj K, Trinh TT, Yun SY, Yeo SJ, Sung HW,Park H. Molecular characterization and pathogenesis of H6N6 low pathogenic avian influenza viruses Isolated from mallard ducks(Anas platyrhynchos)in South Korea[J/OL]. Viruses, 2022, 14(5):1001. DOI:10.3390/v14051001.
- [34]Jiao P, Tian G, Li Y, Deng G, Jiang Y, Liu C, Liu W, Bu Z, Kawaoka Y, Chen H. A single-amino-acid substitution in the NS1 protein changes the pathogenicity of H5N1 avian influenza viruses in mice[J/OL]. J Virol, 2008, 82(3):1146-1154. DOI:10.1128/JVI.01698-07.