美洲型猪繁殖与呼吸综合征病毒实时荧光重组酶聚合酶扩增技术(RPA)检测方法的建立及其应用Development and Application of A Real-time RPA Method for Detection of American Genotype of Porcine Reproductive and Respiratory Syndrome Virus
王方洲;孙普;张婧;李平花;马雪青;赵志荀;李凤娟;李国秀;李冬;王健;袁红;曾巧英;刘在新;卢曾军;
摘要(Abstract):
美洲型猪繁殖与呼吸综合征病毒(Porcine reproductive and respiratory syndrome virus,PRRSV)在我国出现了多种基因亚型毒株混合流行和重组的复杂变化,其引起的猪繁殖与呼吸综合征(PorcineReproductiveand Respiratory Syndrome,PRRS)已成为危害程度仅次于非洲猪瘟的重要疫病。为建立一种快速而敏感性高的美洲型PRRSV检测方法,本研究分析了国内美洲型全基因组序列,利用重组酶聚合酶扩增技术(Recombinase Polymerase Amplification,RPA),设计合成特异性引物和探针,优化反应体系和条件,建立美洲型PRRSV实时荧光RPA检测方法,通过特异性、敏感性、重复性试验及田间样品的比对检测,评价该方法的检测能力,并测定和分析了田间阳性样品的ORF5基因序列。结果显示,该方法在42℃、20 min内即可完成检测,最低检测美洲型PRRSV载量为50拷贝/μL,且与欧洲型PRRSV、口蹄疫病毒、猪瘟病毒、塞内卡病毒、非洲猪瘟病毒、猪伪狂犬病毒、猪圆环病毒、猪流行性腹泻病毒无交叉反应,特异性好;检测50份田间样品该方法的阳性检出率为34%,与实时荧光RT-PCR检测结果的符合率为100%;ORF5序列分析显示检出阳性样品中NADC30-Like毒株占比为88%。结果表明,本研究建立的美洲型PRRSV实时荧光RPA检测方法特异性强、敏感性高,满足PRRSV的快速诊断和流行病学调查。
关键词(KeyWords): PRRSV;美洲型;RPA;应用;ORF5基因
基金项目(Foundation): 甘肃省农业农村厅科技项目(项目号:GSKL-2020-7-2),题目:甘肃省生猪健康养殖疫病防控及生物安全技术集成试验示范项目;; 中国农业科学院兰州兽医研究所创新工程揭榜挂帅项目(项目号:CAAS-ASTIP-JBGS-20210601),题目:猪繁殖与呼吸综合征表位缺失标记疫苗的研制~~
作者(Authors): 王方洲;孙普;张婧;李平花;马雪青;赵志荀;李凤娟;李国秀;李冬;王健;袁红;曾巧英;刘在新;卢曾军;
DOI: 10.13242/j.cnki.bingduxuebao.004263
参考文献(References):
- [1] Lunney J K, Benfield D A, Rowland R R R. Porcine reproductive and respiratory syndrome virus:an update on an emerging and re-emerging viral disease of swine.[J/OL]. Virus Res, 2010, 154(1–2):1–6. DOI:10.1016/j.virusres.2010.10.009.
- [2] Kappes M A, Faaberg K S. PRRSV structure,replication and recombination:Origin of phenotype and genotype diversity[J/OL]. Virol, 2015, 479, 475–486. DOI:10.1016/j.virol.2015.02.012.
- [3]郭宝清,陈章水,刘文兴,崔益洙.从疑似PRRS流产胎儿分离PRRSV的研究[J/OL].中国畜禽传染病,1996(02):3–7.
- [4] Zhou Y J, Hao X F, Tian Z J, Tong G Z, Yuan X F.Highly virulent porcine reproductive and respiratory syndrome virus emerged in China[J/OL]. Transbound Emerg Dis, 2010, 55(3–4):152–164. DOI:10.1111/j.1865-1682.2008.01020.x.
- [5] Tian Z J, An T Q, Zhou Y J, Peng J M, Hu S P, Wei T C, Jing Y F, Xiao Y, Tong G Z. An attenuated live vaccine based on highly pathogenic porcine reproductive and respiratory syndrome virus(HP-PRRSV)protects piglets against HP-PRRS[J/OL]. Vet Microbiol, 2009,138(1–2):34–40. DOI:10.1016/j.vetmic.2009.03.003.
- [6]周峰,常洪涛,赵军,陈陆,王新卫,刘红英,姚慧霞,王川庆,杨霞.2012―2013年猪繁殖与呼吸综合征病毒河南流行株的分离鉴定及分子流行病学调查[J/OL].中国兽医学报,2014, 34(09):1398–1404+1410.
- [7]张洪亮,张文立,许浒,宋帅杰,赵静,相丽润,冷超粮,李真,刘春晓,汤艳东,陈家锃,彭金美,王倩,安同庆,童光志,蔡雪辉,田志军.2014-2019年PRRSV主要流行毒株在我国的变化[J/OL].中国预防兽医学报,2020, 42(05):512–516.
- [8] Zhao J, Xu L, Xu Z W, Deng H D, Li F Q, Sun X G,Zhou Y C, Zhu L. Emergence and spread of NADC34–like PRRSV in Southwest China[J/OL]. Transbound Emerg Dis, 2022, 1–9. DOI:10.1111/tbed.14316.
- [9] Zhou L, Kang R, Xie B, Tian Y, Yang X, Yu J,Wang H. Complete genome sequence of a recombinant NADC30-like strain, SCnj16, of porcine reproductive and respiratory syndrome virus in Southwestern China[J/OL]. Genome Announc, 2018, 6(6):e00004–e00018. DOI:10.1128/genomeA.00004–18.
- [10]Guo Z, Chen X X, Li R, Qiao S, Zhang G. The prevalent status and genetic diversity of porcine reproductive and respiratory syndrome virus in China:a molecular epidemiological perspective[J/OL]. Virol J,2018, 15(1):1–14. DOI:10.1186/s12985-017-0910-6.
- [11]谯雨,王治家,张婧,孙普,白兴文,李坤,包慧芳,曹轶梅,李平花,李冬,刘在新,卢曾军.两株PRRSV NSP2不同位置缺失基因工程病毒的生物学特性分析[J/OL].中国兽医科学,2019, 49(09):1073–1081.
- [12]Shi M, Lam T T Y, Hon C C, et al. Phylogeny based evolutionary, demogr aphical, and geographical dissection of North American type 2 Porcine reproductive and respiratory syndrome viruses[J/OL]. J Virol, 2010, 84(17):8700–8711. DOI:10.1128/JVI.02551-09.
- [13]吴瑕,劳梦琴,谭祥梅,陈鹏飞,于家荣,朱钧锐,张玉娇,虞凌雪,高飞,姜一峰,童光志,周艳君.2017–2020年我国部分地区PRRSV流行毒株变异情况分析[J/OL].中国动物传染病学报,2021, 29(05):64–74.
- [14]施宁雪,靳晶豪,陈孝仁.重组酶聚合酶扩增技术及其在生命科学领域的应用[J/OL].江西农业学报,2021,33(10):62–72.
- [15]张阳,孙涛,徐聪林,周冲.登革病毒逆转录重组酶聚合酶扩增-测流层析试纸条检测方法的建立与评价[J/OL].口岸卫生控制,2019, 24(03):30–34.
- [16]Owen Higgins, Eoin Clancy, Matthew S.Forrest, Olaf Piepenburg, Martin cormican, Teck Wee Boo, Nicola O′Sullivan, Claire McGuinness, Deirdre Cafferty,Robert Cunney, Terry J. Smith. Duplex recombinase polymerase amplification assays incorporating competitive internal controls for bacterial meningitis detection[J/OL]. Anal Biochem, 2018, 546:10–16.DOI:10.1016/j.ab.2018.01.016.
- [17]Cui J, Zhao Y, Sun Y, Yu L, Liu Q, Zhan X, Li M,He L, Zhao J. Detection of Babesia gibsoni in dogs by combining recombinase polymerase amplification(RPA)with lateral flow(LF)dipstick[J/OL]. Parasitol Res,2018, 117(12):3945–3951. DOI:10.1007/s00436-018-6104-3.
- [18]Miao F, Zhang J, Li N, Chen T, Wang L, Zhang F,Mi L, Zhang J, Wang S, Wang Y. Rapid and sensitive recombinase polymerase amplification combined with lateral flow strip for detecting African swine fever virus[J/OL]. Front Microbiol, 2019, 10:1004. DOI:10.3389/fmicb.2019.01004.
- [19]樊晓旭,哈登楚日亚,王英丽,王姣,刘春菊,迟田英,赵永刚,张志诚,吴晓东,王志亮.塞尼卡谷病毒重组酶聚合酶扩增技术(RPA)实时荧光检测方法的建立[J/OL].中国动物检疫,2017, 34(08):81–86.
- [20]Yang Y, Qin X, Sun Y, Chen T, Zhang Z. Rapid detection of highly pathogenic porcine reproductive and respiratory syndrome virus by a fluorescent probe-based isothermal recombinase polymerase amplification assay[J/OL]. Virus Genes, 2016, 52(6):883–886. DOI:10.1007/s11262-016-1378-y.
- [21]吴海港,饶品彬,蔡晔,全滟平,姜永厚.快速实时荧光定量PCR检测猪繁殖与呼吸综合症病毒方法的建立[J/OL].浙江理工大学学报,2015, 33(03):258–263.
- [22]Qiu W B, Kai M, Liu Y Y, Zhang Y Y, Wang Z,Chen Z, Yang J, Sun W B, L Guo H, Ren S F, Chen L, Yang G W, Zhang F, Shi J L, Li J, Du Y J, Yu J,Wu J Q. Simultaneous detection of classical PRRSV,highly pathogenic PRRSV and NADC30-like PRRSV by TaqMan probe real-time PCR[J/OL]. J Virol Med,2020, 282:113774.DOI:10.1016/j.jviromet.2019.113774.
- [23]Zhuang L, Ji Y, Tian P, Wang K, Kou C, Gu N,Zhang Y. Polymerase chian reaction combined with fluorescent lateral flow immunoassay based on magnetic purification for rapid detection of canine parvovirus 2[J/OL]. BMC Vet Res, 2019, 15(1):1–13. DOI:10.1186/s12917-019-1774-3.
- [24]施奕,徐昌平,余蓓蓓,卢亦愚,梅玲玲.重组酶聚合酶扩增技术研究进展[J/OL].病毒学报,2020, 36(03):522–532. DOI:10.13242/j.cnki.bingduxuebao.003708.
- [25]Ahmed A, El-Deeb A, El-Tholoth M, Abd EI Kader H, Ahmed A, Hassan S, Hoffmann B, Haas B,Mohamed A. Shalaby, Frank T. Hufert, Weidmann M.A portable reverse transcription recombinase polymerase amplification assay for rapid detection of foot-and-mouth disease virus[J/OL]. PLoS One, 2013, 8(8):e71642.DOI:10.1371/journal.pone.0071642.
- [26]Yang Y, Qin X, Song Y, Zhang W, Hu G, Dou Y, Li Y, Zhang Z. Development of real-time and lateral flow strip reverse transcription recombinase polymerase Amplification assays for rapid detection of peste des petits ruminants virus[J/OL]. Virol J, 2017, 14(1):1–10. DOI:10.1186/s12985-017-0688-6.
- [27]Euler M, Wang Y, Heidenreich D, Patel P, Strohmeire O. Development of a panel of recombinase polymerase amplification assays for detection of biothreat agents[J/OL]. J Cli Microbiol, 2013, 51(4):1110–1117. DOI:10.1128/JCM.02704-12.
- [28]Yang Y, Qin X D, Wang G X, Zhang Y, Shang Y J,Zhang Z D. et al. Development of a fluorescent probebased recombinase polymerase amplification assay for rapid detection of Orf virus[J/OL]. Virol J, 2015, 12(1):1–7. DOI:10.1186/s12985-015-0440-z.